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      Clonal Plants as Meta-Holobionts

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          Abstract

          The holobiont concept defines a given organism and its associated symbionts as a potential level of selection over evolutionary time. In clonal plants, recent experiments demonstrated vertical transmission of part of the microbiota from one ramet (i.e., potentially autonomous individual) to another within the clonal network (i.e., connections by modified stems present in ∼35% of all plants).

          ABSTRACT

          The holobiont concept defines a given organism and its associated symbionts as a potential level of selection over evolutionary time. In clonal plants, recent experiments demonstrated vertical transmission of part of the microbiota from one ramet (i.e., potentially autonomous individual) to another within the clonal network (i.e., connections by modified stems present in ∼35% of all plants). Because of this heritability, and potentially reciprocal exchange of microbes between generations of ramets, we propose to extend the existing holobiont framework to the concept of meta-holobiont. A meta-holobiont is a network of holobionts that can exchange biomolecules and microbiota across generations, thus impacting the fitness of both biological scales: holobionts and meta-holobionts. Specifically, meta-holobiont dynamics can result in sharing, specialization, and division of labor across plant clonal generations. This paper, which coins the meta-holobiont concept, is expected to stimulate discussion and to be applied beyond the context of networked clonal plants (e.g., to social insects).

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          Patterns and processes of microbial community assembly.

          Recent research has expanded our understanding of microbial community assembly. However, the field of community ecology is inaccessible to many microbial ecologists because of inconsistent and often confusing terminology as well as unnecessarily polarizing debates. Thus, we review recent literature on microbial community assembly, using the framework of Vellend (Q. Rev. Biol. 85:183-206, 2010) in an effort to synthesize and unify these contributions. We begin by discussing patterns in microbial biogeography and then describe four basic processes (diversification, dispersal, selection, and drift) that contribute to community assembly. We also discuss different combinations of these processes and where and when they may be most important for shaping microbial communities. The spatial and temporal scales of microbial community assembly are also discussed in relation to assembly processes. Throughout this review paper, we highlight differences between microbes and macroorganisms and generate hypotheses describing how these differences may be important for community assembly. We end by discussing the implications of microbial assembly processes for ecosystem function and biodiversity.
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            Plant coexistence and the niche

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              Neutral theory in community ecology and the hypothesis of functional equivalence

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                Author and article information

                Contributors
                Role: Editor
                Journal
                mSystems
                mSystems
                msys
                msys
                mSystems
                mSystems
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2379-5077
                19 March 2019
                Mar-Apr 2019
                : 4
                : 2
                : e00213-18
                Affiliations
                [a ]Université de Rennes, CNRS, UMR6553 EcoBio, Rennes, France
                [b ]Université de Lyon 1, CNRS, Villeurbanne, France
                [c ]Department of Biochemistry, Microbiology and Immunology, Wayne State University, Detroit, Michigan, USA
                [d ]Department of Molecular Microbiology and Biotechnology, Tel-Aviv University, Tel Aviv, Israel
                Cornell University
                Author notes
                Address correspondence to Philippe Vandenkoornhuyse, philippe.vandenkoornhuyse@ 123456univ-rennes1.fr .
                [*]

                Present address: Nathan Vannier, Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany.

                Citation Vannier N, Mony C, Bittebiere A-K, Theis KR, Rosenberg E, Vandenkoornhuyse P. 2019. Clonal plants as meta-holobionts. mSystems 4:e00213-18. https://doi.org/10.1128/mSystems.00213-18.

                Article
                mSystems00213-18
                10.1128/mSystems.00213-18
                6426648
                30944875
                8f5ab4ca-0e11-4751-9aa5-0e0e2c489cdd
                Copyright © 2019 Vannier et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                Page count
                supplementary-material: 2, Figures: 3, Tables: 0, Equations: 0, References: 46, Pages: 10, Words: 5729
                Funding
                Funded by: CNRS-EC2CO;
                Award ID: Microland
                Award Recipient :
                Funded by: CNRS-EC2CO;
                Award ID: Microland
                Award Recipient :
                Funded by: CNRS-EC2CO;
                Award ID: Microland
                Award Recipient :
                Categories
                Opinion/Hypothesis
                Host-Microbe Biology
                Custom metadata
                March/April 2019

                holobiont,plant-microbe interactions,symbiosis
                holobiont, plant-microbe interactions, symbiosis

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