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      Additions to the genus Chroogomphus (Boletales, Gomphidiaceae) from Pakistan

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          Abstract

          With only three published reports, the genus Chroogomphus ( Boletales , Gomphidiaceae ) is poorly studied in Pakistan. During recent sampling events in Khyber Pakhtunkhawa province, Pakistan, several collections of Chroogomphus were made, representing undescribed taxa. Based on morphological and molecular data, two new species are described: Chroogomphus pakistanicus and C. pruinosus . We present a description and illustrations for both taxa. A molecular phylogenetic reconstruction, based on the internal transcribed spacer (ITS1–5.8S–ITS2) barcode region, shows that C. pakistanicus and C. pruinosus are placed in two different subgenera of Chroogomphus ( subg. Chroogomphus and subg. Siccigomphus , respectively).

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          BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95⁄98⁄NT

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            Coalescent-Based Species Delimitation Approach Uncovers High Cryptic Diversity in the Cosmopolitan Lichen-Forming Fungal Genus Protoparmelia (Lecanorales, Ascomycota)

            Garima Singh, Francesco Dal Grande, Pradeep Divakar … (2015)
            Species recognition in lichen-forming fungi has been a challenge because of unsettled species concepts, few taxonomically relevant traits, and limitations of traditionally used morphological and chemical characters for identifying closely related species. Here we analyze species diversity in the cosmopolitan genus Protoparmelia s.l. The ~25 described species in this group occur across diverse habitats from the boreal -arctic/alpine to the tropics, but their relationship to each other remains unexplored. In this study, we inferred the phylogeny of 18 species currently assigned to this genus based on 160 specimens and six markers: mtSSU, nuLSU, ITS, RPB1, MCM7, and TSR1. We assessed the circumscription of species-level lineages in Protoparmelia s. str. using two coalescent-based species delimitation methods – BP&P and spedeSTEM. Our results suggest the presence of a tropical and an extra-tropical lineage, and eleven previously unrecognized distinct species-level lineages in Protoparmelia s. str. Several cryptic lineages were discovered as compared to phenotype-based species delimitation. Many of the putative species are supported by geographic evidence.
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              Hidden fungal diversity from the Neotropics: Geastrum hirsutum , G . schweinitzii (Basidiomycota, Geastrales) and their allies

              Thiago Accioly, Julieth Sousa, Pierre-Arthur Moreau … (2019)
              Taxonomy of Geastrum species in the neotropics has been subject to divergent opinions among specialists. In our study, type collections were reassessed and compared with recent collections in order to delimit species in Geastrum, sect. Myceliostroma, subsect. Epigaea. A thorough review of morphologic features combined with barcode and phylogenetic analyses (ITS and LSU nrDNA) revealed six new species (G. neoamericanum, G. rubellum, G. brunneocapillatum, G. baculicrystallum, G. rubropusillum and G. courtecuissei). In additon, the presence of hairs on the exoperidium, a commonly used feature to diagnose Geastrum species, proved to be ineffective because it is a derived character within subsect. Epigaea.
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                Author and article information

                Contributors
                Ammara Sattar
                Journal
                Journal ID (nlm-ta): MycoKeys
                Journal ID (iso-abbrev): MycoKeys
                Journal ID (publisher-id): 11
                Journal ID (index): urn:lsid:arphahub.com:pub:C004A564-9D6A-5F9F-B058-6A3815DFE9C3
                Title: MycoKeys
                Publisher: Pensoft Publishers
                ISSN (Print): 1314-4057
                ISSN (Electronic): 1314-4049
                Publication date Collection: 2020
                Publication date (Electronic): 30 March 2020
                Volume: 66
                Pages: 23-38
                Affiliations
                [1 ] Department of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore, 54590, Pakistan
                [2 ] Department of Botany and Plant Pathology, Purdue University, USA
                [3 ] Faculty of Science, University of South Bohemia, Czech Republic
                Author notes
                Corresponding author: Ammara Sattar ( ammarasattar81@ 123456gmail.com )

                Academic editor: O. Raspé

                Author information
                https://orcid.org/0000-0002-6424-0834
                Article
                Publisher ID: 38659
                DOI: 10.3897/mycokeys.66.38659
                PMC ID: 7136303
                PubMed ID: 32273792
                SO-VID: 971bd098-9fdd-47c6-9b44-637fc1bcf27d
                Copyright © Munazza Kiran, Ammara Sattar, Khushbakht Zamir, Danny Haelewaters, Abdul Nasir Khalid
                License:

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                Date received : 30 July 2019
                Date accepted : 24 January 2020
                Categories
                Subject: Research Article
                Subject: Basidiomycota
                Subject: Boletales
                Subject: Gomphidiaceae
                Subject: Phylogeny
                Subject: Taxonomy
                Subject: Asia

                Keywords: 2 new taxa, basidiomycota , boletales ,coniferous forests,macrofungi,phylogeny,taxonomy,fungi,boletales,gomphidiaceae
                Data availability:
                Keywords: 2 new taxa, basidiomycota , boletales , coniferous forests, macrofungi, phylogeny, taxonomy, fungi, boletales, gomphidiaceae

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