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      Deadly and venomous Lonomia caterpillars are more than the two usual suspects

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          Abstract

          Caterpillars of the Neotropical genus Lonomia (Lepidoptera: Saturniidae) are responsible for some fatal envenomation of humans in South America inducing hemostatic disturbances in patients upon skin contact with the caterpillars’ spines. Currently, only two species have been reported to cause hemorrhagic syndromes in humans: Lonomia achelous and Lonomia obliqua. However, species identifications have remained largely unchallenged despite improved knowledge of venom diversity and growing evidence that the taxonomy used over past decades misrepresents and underestimates species diversity. Here, we revisit the taxonomic diversity and distribution of Lonomia species using the most extensive dataset assembled to date, combining DNA barcodes, morphological comparisons, and geographical information. Considering new evidence for seven undescribed species as well as three newly proposed nomenclatural changes, our integrative approach leads to the recognition of 60 species, of which seven are known or strongly suspected to cause severe envenomation in humans. From a newly compiled synthesis of epidemiological data, we also examine the consequences of our results for understanding Lonomia envenomation risks and call for further investigations of other species’ venom activities. This is required and necessary to improve alertness in areas at risk, and to define adequate treatment strategies for envenomed patients, including performing species identification and assessing the efficacy of anti- Lonomia serums against a broader diversity of species.

          Author summary

          Caterpillars of the genus Lonomia (Lepidoptera: Saturniidae) are responsible for some fatal envenomation of humans in South America due to the hemotoxic activity of their venom. Historically, only two species have been reported to cause such hemorrhagic syndromes in humans, Lonomia achelous and Lonomia obliqua; however, the number of species described in the last decade within the genus has increased by 300% indicating that the diversity of the genus has been underestimated. Here, we revise some taxonomic aspects of genus Lonomia, update the diversity and their spatial distribution, and highlight their potential epidemiological relevance. We provide evidence of seven species being potentially involved in accidents and at least three undescribed new species. Our work emphasizes the need for further research of Lonomia as a genus with medical importance.

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          Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

          Summary: The two main functions of bioinformatics are the organization and analysis of biological data using computational resources. Geneious Basic has been designed to be an easy-to-use and flexible desktop software application framework for the organization and analysis of biological data, with a focus on molecular sequences and related data types. It integrates numerous industry-standard discovery analysis tools, with interactive visualizations to generate publication-ready images. One key contribution to researchers in the life sciences is the Geneious public application programming interface (API) that affords the ability to leverage the existing framework of the Geneious Basic software platform for virtually unlimited extension and customization. The result is an increase in the speed and quality of development of computation tools for the life sciences, due to the functionality and graphical user interface available to the developer through the public API. Geneious Basic represents an ideal platform for the bioinformatics community to leverage existing components and to integrate their own specific requirements for the discovery, analysis and visualization of biological data. Availability and implementation: Binaries and public API freely available for download at http://www.geneious.com/basic, implemented in Java and supported on Linux, Apple OSX and MS Windows. The software is also available from the Bio-Linux package repository at http://nebc.nerc.ac.uk/news/geneiousonbl. Contact: peter@biomatters.com
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            Interactive Tree Of Life (iTOL) v4: recent updates and new developments

            Abstract The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone. The current version introduces four new dataset types, together with numerous new features. Annotation options have been expanded and new control options added for many display elements. An interactive spreadsheet-like editor has been implemented, providing dataset creation and editing directly in the web interface. Font support has been rewritten with full support for UTF-8 character encoding throughout the user interface. Google Web Fonts are now fully supported in the tree text labels. iTOL v4 is the first tool which supports direct visualization of Qiime 2 trees and associated annotations. The user account system has been streamlined and expanded with new navigation options, and currently handles >700 000 trees from more than 40 000 individual users. Full batch access has been implemented allowing programmatic upload and export of trees and annotations.
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              Biological identifications through DNA barcodes.

              Although much biological research depends upon species diagnoses, taxonomic expertise is collapsing. We are convinced that the sole prospect for a sustainable identification capability lies in the construction of systems that employ DNA sequences as taxon 'barcodes'. We establish that the mitochondrial gene cytochrome c oxidase I (COI) can serve as the core of a global bioidentification system for animals. First, we demonstrate that COI profiles, derived from the low-density sampling of higher taxonomic categories, ordinarily assign newly analysed taxa to the appropriate phylum or order. Second, we demonstrate that species-level assignments can be obtained by creating comprehensive COI profiles. A model COI profile, based upon the analysis of a single individual from each of 200 closely allied species of lepidopterans, was 100% successful in correctly identifying subsequent specimens. When fully developed, a COI identification system will provide a reliable, cost-effective and accessible solution to the current problem of species identification. Its assembly will also generate important new insights into the diversification of life and the rules of molecular evolution.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: Project administrationRole: ResourcesRole: SupervisionRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Data curationRole: Formal analysisRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: Writing – review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: Writing – original draftRole: Writing – review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: Writing – review & editing
                Role: Data curationRole: InvestigationRole: Writing – review & editing
                Role: InvestigationRole: ResourcesRole: Writing – review & editing
                Role: InvestigationRole: ResourcesRole: Writing – review & editing
                Role: ConceptualizationRole: InvestigationRole: ResourcesRole: Writing – review & editing
                Role: ConceptualizationRole: ResourcesRole: SupervisionRole: Writing – review & editing
                Role: Funding acquisitionRole: InvestigationRole: Project administrationRole: ResourcesRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Funding acquisitionRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: Project administrationRole: ResourcesRole: SupervisionRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Negl Trop Dis
                PLoS Negl Trop Dis
                plos
                PLOS Neglected Tropical Diseases
                Public Library of Science (San Francisco, CA USA )
                1935-2727
                1935-2735
                23 February 2023
                February 2023
                : 17
                : 2
                : e0011063
                Affiliations
                [1 ] Centro de Investigaciones en Microbiología y Parasitología Tropical (CIMPAT), Facultad de Ciencias, Universidad de los Andes, Bogotá, Colombia, Bogotá, Colombia
                [2 ] Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum national d’Histoire naturelle, CNRS, EPHE, Sorbonne Université, Université des Antilles, Paris, France
                [3 ] CESAB, Centre de synthèse et d’Analyse sur la Biodiversité, Montpellier, France
                [4 ] Pontificia Universidad Javeriana, Facultad de Estudios Ambientales y Rurales, Bogotá, Colombia
                [5 ] Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Bogotá, Colombia
                [6 ] CIRAD, UMR PHIM, Montpellier, France
                [7 ] PHIM, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France
                [8 ] Secretaría de Salud de Casanare. Area de Salud Pública, Yopal, Colombia
                [9 ] Laboratorio de Salud Pública del Meta, Villavicencio, Colombia
                [10 ] Laboratório Coleções Zoológicas, Instituto Butantan, São Paulo–SP, Brazil
                [11 ] Laboratório de Fisiopatologia, Instituto Butantan, São Paulo–SP, Brazil
                [12 ] CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
                [13 ] Natural History Museum, London, United Kingdom
                Fundação de Medicina Tropical Doutor Heitor Vieira Dourado, BRAZIL
                Author notes

                The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0001-8089-4056
                Article
                PNTD-D-22-01250
                10.1371/journal.pntd.0011063
                9949635
                36821543
                b8111acc-a3d5-4a82-b77e-ab01a15dbfcb
                © 2023 González et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 30 September 2022
                : 28 December 2022
                Page count
                Figures: 4, Tables: 0, Pages: 20
                Funding
                Funded by: Vicerrectoría de Investigación y Creación, Universidad de los Andes, Colombia
                Award ID: INV-2020-105-2030
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100009543, Pontificia Universidad Javeriana;
                Award ID: PPTA 7996
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100020367, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt;
                Award ID: 16-220
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001665, Agence Nationale de la Recherche;
                Award ID: SPHINX grant no. ANR-16-CE02-0011-01
                Award Recipient :
                Funded by: French Foundation of Research on Biodiversity
                Award ID: ACTIAS project
                Award Recipient :
                Funded by: CESAB synthesis centre
                Award ID: ACTIAS project
                Award Recipient :
                This work was funded by Vicerrectoría de Investigaciones, and Facultad de Ciencias INV-2020-105-2030, Universidad de Los Andes (Granted to CG). Pontificia Universidad Javeriana, Facultad de Estudios Ambientales y Rurales, PPTA 7996 (Granted to ARAS). Humboldt Institute through the collaboration agreement 16-220 (Granted to MAG). French National Research Agency (ANR) SPHINX grant no. ANR-16-CE02-0011-01 (to RR, TD) and French Foundation of Research on Biodiversity (FRB; www.fondationbiodiversité.fr) and CESAB synthesis centre to ACTIAS project (to RR, LBM, IJK, TD). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and life sciences
                Molecular biology
                Molecular biology techniques
                DNA barcoding
                Research and analysis methods
                Molecular biology techniques
                DNA barcoding
                Biology and life sciences
                Evolutionary biology
                Evolutionary systematics
                Molecular systematics
                DNA barcoding
                Biology and life sciences
                Taxonomy
                Evolutionary systematics
                Molecular systematics
                DNA barcoding
                Computer and information sciences
                Data management
                Taxonomy
                Evolutionary systematics
                Molecular systematics
                DNA barcoding
                Biology and Life Sciences
                Zoology
                Entomology
                Insects
                Moths and Butterflies
                Caterpillars
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Invertebrates
                Arthropoda
                Insects
                Moths and Butterflies
                Caterpillars
                Biology and Life Sciences
                Zoology
                Animals
                Invertebrates
                Arthropoda
                Insects
                Moths and Butterflies
                Caterpillars
                Biology and Life Sciences
                Ecology
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                Ecology
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                Species Diversity
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                Taxonomy
                Computer and Information Sciences
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                Taxonomy
                Biology and Life Sciences
                Evolutionary Biology
                Evolutionary Systematics
                Phylogenetics
                Phylogenetic Analysis
                Biology and Life Sciences
                Taxonomy
                Evolutionary Systematics
                Phylogenetics
                Phylogenetic Analysis
                Computer and Information Sciences
                Data Management
                Taxonomy
                Evolutionary Systematics
                Phylogenetics
                Phylogenetic Analysis
                People and places
                Geographical locations
                South America
                Brazil
                Biology and Life Sciences
                Zoology
                Entomology
                Insects
                Moths and Butterflies
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Invertebrates
                Arthropoda
                Insects
                Moths and Butterflies
                Biology and Life Sciences
                Zoology
                Animals
                Invertebrates
                Arthropoda
                Insects
                Moths and Butterflies
                People and places
                Geographical locations
                South America
                Colombia
                Custom metadata
                Detailed data are available in DS-LONO2: dx.doi.org/10.5883/DS-LONO2.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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