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      The deubiquitinase OTUB1 augments NF-κB-dependent immune responses in dendritic cells in infection and inflammation by stabilizing UBC13

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          Abstract

          Dendritic cells (DCs) are indispensable for defense against pathogens but may also contribute to immunopathology. Activation of DCs upon the sensing of pathogens by Toll-like receptors (TLRs) is largely mediated by pattern recognition receptor/nuclear factor-κB (NF-κB) signaling and depends on the appropriate ubiquitination of the respective signaling molecules. However, the ubiquitinating and deubiquitinating enzymes involved and their interactions are only incompletely understood. Here, we reveal that the deubiquitinase OTU domain, ubiquitin aldehyde binding 1 (OTUB1) is upregulated in DCs upon murine Toxoplasma gondii infection and lipopolysaccharide challenge. Stimulation of DCs with the TLR11/12 ligand T. gondii profilin and the TLR4 ligand lipopolysaccharide induced an increase in NF-κB activation in OTUB1-competent cells, resulting in elevated interleukin-6 (IL-6), IL-12, and tumor necrosis factor (TNF) production, which was also observed upon the specific stimulation of TLR2, TLR3, TLR7, and TLR9. Mechanistically, OTUB1 promoted NF-κB activity in DCs by K48-linked deubiquitination and stabilization of the E2-conjugating enzyme UBC13, resulting in increased K63-linked ubiquitination of IRAK1 (IL-1 receptor-associated kinase 1) and TRAF6 (TNF receptor-associated factor 6). Consequently, DC-specific deletion of OTUB1 impaired the production of cytokines, in particular IL-12, by DCs over the first 2 days of T. gondii infection, resulting in the diminished production of protective interferon-γ (IFN-γ) by natural killer cells, impaired control of parasite replication, and, finally, death from chronic T. encephalitis, all of which could be prevented by low-dose IL-12 treatment in the first 3 days of infection. In contrast, impaired OTUB1-deficient DC activation and cytokine production by OTUB1-deficient DCs protected mice from lipopolysaccharide-induced immunopathology. Collectively, these findings identify OTUB1 as a potent novel regulator of DCs during infectious and inflammatory diseases.

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          Mitogen-activated protein kinases in innate immunity.

          Following pathogen infection or tissue damage, the stimulation of pattern recognition receptors on the cell surface and in the cytoplasm of innate immune cells activates members of each of the major mitogen-activated protein kinase (MAPK) subfamilies--the extracellular signal-regulated kinase (ERK), p38 and Jun N-terminal kinase (JNK) subfamilies. In conjunction with the activation of nuclear factor-κB and interferon-regulatory factor transcription factors, MAPK activation induces the expression of multiple genes that together regulate the inflammatory response. In this Review, we discuss our current knowledge about the regulation and the function of MAPKs in innate immunity, as well as the importance of negative feedback loops in limiting MAPK activity to prevent host tissue damage. We also examine how pathogens have evolved complex mechanisms to manipulate MAPK activation to increase their virulence. Finally, we consider the potential of the pharmacological targeting of MAPK pathways to treat autoimmune and inflammatory diseases.
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            STING regulates intracellular DNA-mediated, type I interferon-dependent innate immunity.

            The innate immune system is critical for the early detection of invading pathogens and for initiating cellular host defence countermeasures, which include the production of type I interferon (IFN). However, little is known about how the innate immune system is galvanized to respond to DNA-based microbes. Here we show that STING (stimulator of interferon genes) is critical for the induction of IFN by non-CpG intracellular DNA species produced by various DNA pathogens after infection. Murine embryonic fibroblasts, as well as antigen presenting cells such as macrophages and dendritic cells (exposed to intracellular B-form DNA, the DNA virus herpes simplex virus 1 (HSV-1) or bacteria Listeria monocytogenes), were found to require STING to initiate effective IFN production. Accordingly, Sting-knockout mice were susceptible to lethal infection after exposure to HSV-1. The importance of STING in facilitating DNA-mediated innate immune responses was further evident because cytotoxic T-cell responses induced by plasmid DNA vaccination were reduced in Sting-deficient animals. In the presence of intracellular DNA, STING relocalized with TANK-binding kinase 1 (TBK1) from the endoplasmic reticulum to perinuclear vesicles containing the exocyst component Sec5 (also known as EXOC2). Collectively, our studies indicate that STING is essential for host defence against DNA pathogens such as HSV-1 and facilitates the adjuvant activity of DNA-based vaccines.
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              Activation of the IkappaB kinase complex by TRAF6 requires a dimeric ubiquitin-conjugating enzyme complex and a unique polyubiquitin chain.

              TRAF6 is a signal transducer in the NF-kappaB pathway that activates IkappaB kinase (IKK) in response to proinflammatory cytokines. We have purified a heterodimeric protein complex that links TRAF6 to IKK activation. Peptide mass fingerprinting analysis reveals that this complex is composed of the ubiquitin conjugating enzyme Ubc13 and the Ubc-like protein Uev1A. We find that TRAF6, a RING domain protein, functions together with Ubc13/Uev1A to catalyze the synthesis of unique polyubiquitin chains linked through lysine-63 (K63) of ubiquitin. Blockade of this polyubiquitin chain synthesis, but not inhibition of the proteasome, prevents the activation of IKK by TRAF6. These results unveil a new regulatory function for ubiquitin, in which IKK is activated through the assembly of K63-linked polyubiquitin chains.
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                Author and article information

                Contributors
                sunrim@163.com
                schlueter.dirk@mh-hannover.de
                Journal
                Cell Mol Immunol
                Cell Mol Immunol
                Cellular and Molecular Immunology
                Nature Publishing Group UK (London )
                1672-7681
                2042-0226
                5 February 2020
                5 February 2020
                June 2021
                : 18
                : 6
                : 1512-1527
                Affiliations
                [1 ]GRID grid.5807.a, ISNI 0000 0001 1018 4307, Institute of Medical Microbiology and Hospital Hygiene, , Otto-von-Guericke University Magdeburg, ; 39120 Magdeburg, Germany
                [2 ]GRID grid.10423.34, ISNI 0000 0000 9529 9877, Institute of Medical Microbiology and Hospital Epidemiology, , Hannover Medical School, ; 30625 Hannover, Germany
                [3 ]GRID grid.268099.c, ISNI 0000 0001 0348 3990, Chemical Biology Research Center, School of Pharmaceutical Sciences, , Wenzhou Medical University, ; 325035 Wenzhou, China
                [4 ]GRID grid.6190.e, ISNI 0000 0000 8580 3777, Department of Neuropathology, Faculty of Medicine and University Hospital Cologne, , University of Cologne, ; 50931 Cologne, Germany
                [5 ]GRID grid.452370.7, ISNI 0000 0004 0408 1805, Institute for Experimental Infection Research, , TWINCORE Centre for Experimental and Clinical Infection Research, a joint venture between the Hannover Medical School and the Helmholtz Centre for Infection Research, ; 30625 Hannover, Germany
                [6 ]GRID grid.5807.a, ISNI 0000 0001 1018 4307, Institute for Clinical Chemistry and Pathobiochemistry, , Otto-von-Guericke University Magdeburg, ; 39120 Magdeburg, Germany
                [7 ]GRID grid.10423.34, ISNI 0000 0000 9529 9877, Cluster of Excellence-Resolving Infection Susceptibility (RESIST), , Hannover Medical School, ; 30625 Hannover, Germany
                [8 ]GRID grid.10548.38, ISNI 0000 0004 1936 9377, Department of Molecular Biosciences, , Stockholm University, ; 10691 Stockholm, Sweden
                [9 ]GRID grid.5807.a, ISNI 0000 0001 1018 4307, Institute for Experimental Internal Medicine, , Otto-von-Guericke University Magdeburg, ; 39120 Magdeburg, Germany
                Author information
                http://orcid.org/0000-0001-8428-9339
                http://orcid.org/0000-0003-0503-9564
                Article
                362
                10.1038/s41423-020-0362-6
                8167118
                32024978
                e7173d78-03ae-47f6-9acd-90decfa8d59e
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 29 July 2019
                : 1 January 2020
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100001659, Deutsche Forschungsgemeinschaft (German Research Foundation);
                Award ID: SFB 854, TP5
                Award ID: SFB 854, TP5
                Award ID: SFB 854, TP5
                Award ID: SFB 854, TP5
                Award ID: SFB 854, TP5
                Award ID: SFB 854, TP5
                Award ID: SFB 854, TP5
                Award ID: SFB900-B2
                Award ID: SFB900-B2
                Award Recipient :
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                © The Author(s), under exclusive licence to CSI and USTC 2021

                Immunology
                otub1,dendritic cell,signal transduction,ubiquitination,innate immunity,cell signalling,mechanisms of disease,infection,inflammation

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