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      A Quantitative Framework to Study Potential Benefits and Harms of Multi-Cancer Early Detection Testing

      , , , ,
      Cancer Epidemiology, Biomarkers & Prevention
      American Association for Cancer Research (AACR)

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          Abstract

          Background:

          Multi-cancer tests offer screening for multiple cancers with one blood draw, but the potential population impact is poorly understood.

          Methods:

          We formulate mathematical expressions for expected numbers of: (i) individuals exposed to unnecessary confirmation tests ( ${\rm{EUC}}\(), (ii) cancers detected ( \){\rm{CD}}$ ), and (iii) lives saved ( ${\rm{LS}}\() given test performance, disease incidence and mortality, and mortality reduction. We add colorectal, liver, lung, ovary, and pancreatic cancer to a test for breast cancer, approximating prevalence at ages 50, 60, or 70 using incidence over the next 5 years and mortality using corresponding probabilities of cancer death over 15 years in the Surveillance, Epidemiology, and End Results registry.

          Results:

          \){\rm{EUC}}\(is overwhelmingly determined by specificity. For a given specificity, \){\rm{EUC}}/{\rm{CD}}\(is most favorable for higher prevalence cancers. Under 99% specificity and sensitivities as published for a 50-cancer test, \){\rm{EUC}}/{\rm{CD}}$ is 1.1 for breast + lung versus 1.3 for breast + liver at age 50. Under a common mortality reduction associated with screening, ${\rm{EUC}}/{\rm{LS}}\(is most favorable when the test includes higher mortality cancers (e.g., 19.9 for breast + lung vs. 30.4 for breast + liver at age 50 assuming a common 10% mortality reduction).

          Conclusions:

          Published multi-cancer test performance suggests a favorable tradeoff of \){\rm{EUC}}$ to ${\rm{CD}}$, yet the full burden of unnecessary confirmations will depend on the posttest work-up protocol. Harm–benefit tradeoffs will be improved if tests prioritize more prevalent and/or lethal cancers for which curative treatments exist.

          Impact:

          The population impact of multi-cancer testing will depend not only on test performance but also on disease characteristics and efficacy of early treatment.

          See related commentary by Duffy and Sasieni, p. 3

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          Most cited references10

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          Detection and localization of surgically resectable cancers with a multi-analyte blood test

          Earlier detection is key to reducing cancer deaths. Here we describe a blood test that can detect eight common cancer types through assessment of the levels of circulating proteins and mutations in cell-free DNA. We applied this test, called CancerSEEK, to 1,005 patients with non-metastatic, clinically detected cancers of the ovary, liver, stomach, pancreas, esophagus, colorectum, lung, or breast. CancerSEEK tests were positive in a median of 70% of the eight cancer types. The sensitivities ranged from 69% to 98% for the detection of five cancer types (ovary, liver, stomach, pancreas, and esophagus) for which there are no screening tests available for average-risk individuals. The specificity of CancerSEEK was > 99%: only 7 of 812 healthy controls scored positive. In addition, CancerSEEK localized the cancer to a small number of anatomic sites in a median of 83% of the patients.
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            Is Open Access

            Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA

            Background: Early cancer detection could identify tumors at a time when outcomes are superior and treatment is less morbid. This prospective case-control sub-study (from NCT02889978 and NCT03085888 ) assessed the performance of targeted methylation analysis of circulating cell-free DNA (cfDNA) to detect and localize multiple cancer types across all stages at high specificity. Participants and methods: The 6689 participants [2482 cancer (>50 cancer types), 4207 non-cancer] were divided into training and validation sets. Plasma cfDNA underwent bisulfite sequencing targeting a panel of >100 000 informative methylation regions. A classifier was developed and validated for cancer detection and tissue of origin (TOO) localization. Results: Performance was consistent in training and validation sets. In validation, specificity was 99.3% [95% confidence interval (CI): 98.3% to 99.8%; 0.7% false-positive rate (FPR)]. Stage I–III sensitivity was 67.3% (CI: 60.7% to 73.3%) in a pre-specified set of 12 cancer types (anus, bladder, colon/rectum, esophagus, head and neck, liver/bile-duct, lung, lymphoma, ovary, pancreas, plasma cell neoplasm, stomach), which account for ~63% of US cancer deaths annually, and was 43.9% (CI: 39.4% to 48.5%) in all cancer types. Detection increased with increasing stage: in the pre-specified cancer types sensitivity was 39% (CI: 27% to 52%) in stage I, 69% (CI: 56% to 80%) in stage II, 83% (CI: 75% to 90%) in stage III, and 92% (CI: 86% to 96%) in stage IV. In all cancer types sensitivity was 18% (CI: 13% to 25%) in stage I, 43% (CI: 35% to 51%) in stage II, 81% (CI: 73% to 87%) in stage III, and 93% (CI: 87% to 96%) in stage IV. TOO was predicted in 96% of samples with cancer-like signal; of those, the TOO localization was accurate in 93%. Conclusions: cfDNA sequencing leveraging informative methylation patterns detected more than 50 cancer types across stages. Considering the potential value of early detection in deadly malignancies, further evaluation of this test is justified in prospective population-level studies.
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              Genome-wide cell-free DNA fragmentation in patients with cancer

              Cell-free DNA (cfDNA) in the blood provides a noninvasive diagnostic avenue for patients with cancer 1 . However, characteristics of the origins and molecular features of cfDNA are poorly understood. We developed an approach to evaluate fragmentation patterns of cfDNA across the genome and found that cfDNA profiles of healthy individuals reflected nucleosomal patterns of white blood cells, while patients with cancer had altered fragmentation profiles. We applied this method to analyze fragmentation profiles of 236 patients with breast, colorectal, lung, ovarian, pancreatic, gastric, or bile duct cancer and 245 healthy individuals. A machine learning model incorporating genome-wide fragmentation features had sensitivities of detection ranging from 57% to >99% among the seven cancer types at 98% specificity, with an overall AUC of 0.94. Fragmentation profiles could be used to identify the tissue of origin of the cancers to a limited number of sites in 75% of cases. Combining our approach with mutation based cfDNA analyses detected 91% of cancer patients. The results of these analyses highlight important properties of cfDNA and provide a proof of principle approach for screening, early detection, and monitoring of human cancer.
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                Author and article information

                Contributors
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                Journal
                Cancer Epidemiology, Biomarkers & Prevention
                American Association for Cancer Research (AACR)
                1055-9965
                1538-7755
                January 01 2022
                September 20 2021
                January 01 2022
                September 20 2021
                : 31
                : 1
                : 38-44
                Article
                10.1158/1055-9965.EPI-21-0380
                f4545940-fb13-4fe5-9ab3-e57c2605bbc9
                © 2021
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