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      Hypomethylation of PlncRNA-1 promoter enhances bladder cancer progression through the miR-136-5p/Smad3 axis

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          Abstract

          Apart from being potential prognostic biomarkers and therapeutic targets, long non-coding RNAs (lncRNAs) modulate the development and progression of multiple cancers. PlncRNA-1 is a newly discovered lncRNA that exhibits the above properties through multiple regulatory pathways. However, the clinical significance and molecular mechanisms of PlncRNA-1 in bladder cancer have not been established. PlncRNA-1 was found to be overexpressed in 71.43% of bladder cancer tissues. Moreover, the expression level correlated with tumor invasion, T stage, age, and number of tumors, but not with gender, recurrent status, preoperative treatment, pathological grade, and tumor size. The expression level of PlncRNA-1 can, to a certain extent, be used as a predictor of the degree of tumor invasion and T stage among BC patients. Inhibiting PlncRNA-1 expression impaired the proliferation, migration, and invasion of T24 and 5637 bladder cancer cells in vitro and in vivo. Specifically, PlncRNA-1 promoter in BC tissues was found to be hypomethylated at position 131 (36157603 on chromosome 21). PlncRNA-1 promoter hypomethylation induces the overexpression of PlncRNA-1. In addition, PlncRNA-1 modulated the expression of smad3 and has-miR-136-5p (miR-136). Conversely, miR-136 regulated the expression of PlncRNA-1 and smad3. PlncRNA-1 mimics competitive endogenous RNA (ceRNA) in its regulation of smad3 expression by binding miR-136. Rescue analysis further revealed that modulation of miR-136 could reverse the expression of smad3 and epithelial–mesenchymal transition (EMT) marker proteins impaired by PlncRNA-1. In summary, PlncRNA-1 has important clinical predictive values and is involved in the post-transcriptional regulation of smad3. The PlncRNA-1/miR-136/smad3 axis provides insights into the regulatory mechanism of BC, thus may serve as a potential therapeutic target and prognostic biomarker for cancer.

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          Global Cancer Statistics 2018: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries

          This article provides a status report on the global burden of cancer worldwide using the GLOBOCAN 2018 estimates of cancer incidence and mortality produced by the International Agency for Research on Cancer, with a focus on geographic variability across 20 world regions. There will be an estimated 18.1 million new cancer cases (17.0 million excluding nonmelanoma skin cancer) and 9.6 million cancer deaths (9.5 million excluding nonmelanoma skin cancer) in 2018. In both sexes combined, lung cancer is the most commonly diagnosed cancer (11.6% of the total cases) and the leading cause of cancer death (18.4% of the total cancer deaths), closely followed by female breast cancer (11.6%), prostate cancer (7.1%), and colorectal cancer (6.1%) for incidence and colorectal cancer (9.2%), stomach cancer (8.2%), and liver cancer (8.2%) for mortality. Lung cancer is the most frequent cancer and the leading cause of cancer death among males, followed by prostate and colorectal cancer (for incidence) and liver and stomach cancer (for mortality). Among females, breast cancer is the most commonly diagnosed cancer and the leading cause of cancer death, followed by colorectal and lung cancer (for incidence), and vice versa (for mortality); cervical cancer ranks fourth for both incidence and mortality. The most frequently diagnosed cancer and the leading cause of cancer death, however, substantially vary across countries and within each country depending on the degree of economic development and associated social and life style factors. It is noteworthy that high-quality cancer registry data, the basis for planning and implementing evidence-based cancer control programs, are not available in most low- and middle-income countries. The Global Initiative for Cancer Registry Development is an international partnership that supports better estimation, as well as the collection and use of local data, to prioritize and evaluate national cancer control efforts. CA: A Cancer Journal for Clinicians 2018;0:1-31. © 2018 American Cancer Society.
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            starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

            Although microRNAs (miRNAs), other non-coding RNAs (ncRNAs) (e.g. lncRNAs, pseudogenes and circRNAs) and competing endogenous RNAs (ceRNAs) have been implicated in cell-fate determination and in various human diseases, surprisingly little is known about the regulatory interaction networks among the multiple classes of RNAs. In this study, we developed starBase v2.0 (http://starbase.sysu.edu.cn/) to systematically identify the RNA–RNA and protein–RNA interaction networks from 108 CLIP-Seq (PAR-CLIP, HITS-CLIP, iCLIP, CLASH) data sets generated by 37 independent studies. By analyzing millions of RNA-binding protein binding sites, we identified ∼9000 miRNA-circRNA, 16 000 miRNA-pseudogene and 285 000 protein–RNA regulatory relationships. Moreover, starBase v2.0 has been updated to provide the most comprehensive CLIP-Seq experimentally supported miRNA-mRNA and miRNA-lncRNA interaction networks to date. We identified ∼10 000 ceRNA pairs from CLIP-supported miRNA target sites. By combining 13 functional genomic annotations, we developed miRFunction and ceRNAFunction web servers to predict the function of miRNAs and other ncRNAs from the miRNA-mediated regulatory networks. Finally, we developed interactive web implementations to provide visualization, analysis and downloading of the aforementioned large-scale data sets. This study will greatly expand our understanding of ncRNA functions and their coordinated regulatory networks.
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              The multilayered complexity of ceRNA crosstalk and competition.

              Recent reports have described an intricate interplay among diverse RNA species, including protein-coding messenger RNAs and non-coding RNAs such as long non-coding RNAs, pseudogenes and circular RNAs. These RNA transcripts act as competing endogenous RNAs (ceRNAs) or natural microRNA sponges - they communicate with and co-regulate each other by competing for binding to shared microRNAs, a family of small non-coding RNAs that are important post-transcriptional regulators of gene expression. Understanding this novel RNA crosstalk will lead to significant insight into gene regulatory networks and have implications in human development and disease.
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                Author and article information

                Contributors
                122526195@qq.com
                Journal
                Cell Death Dis
                Cell Death Dis
                Cell Death & Disease
                Nature Publishing Group UK (London )
                2041-4889
                7 December 2020
                7 December 2020
                December 2020
                : 11
                : 12
                : 1038
                Affiliations
                [1 ]GRID grid.27255.37, ISNI 0000 0004 1761 1174, Department of Urology, Shandong Provincial Hospital, Cheeloo College of Medicine, , Shandong University, ; Jinan, Shandong 250021 China
                [2 ]GRID grid.460018.b, ISNI 0000 0004 1769 9639, Department of Human Resources, , Shandong Provincial Hospital Affiliated to Shandong First Medical University, ; Jinan, Shandong 250021 China
                [3 ]GRID grid.27255.37, ISNI 0000 0004 1761 1174, Department of Human Resources, Shandong Provincial Hospital, Cheeloo College of Medicine, , Shandong University, ; Jinan, Shandong 250021 China
                [4 ]GRID grid.460018.b, ISNI 0000 0004 1769 9639, Department of Ultrasound, , Shandong Provincial Hospital Affiliated to Shandong First Medical University, ; Jinan, Shandong 250021 China
                [5 ]GRID grid.27255.37, ISNI 0000 0004 1761 1174, Department of Ultrasound, Shandong Provincial Hospital, Cheeloo College of Medicine, , Shandong University, ; Jinan, Shandong 250021 China
                [6 ]GRID grid.460018.b, ISNI 0000 0004 1769 9639, Department of Urology, , Shandong Provincial Hospital Affiliated to Shandong First Medical University, ; Jinan, Shandong 250021 China
                [7 ]GRID grid.452422.7, Department of Urology, , The First Affiliated Hospital of Shandong First Medical University, ; Jinan, Shandong 250021 China
                [8 ]GRID grid.27255.37, ISNI 0000 0004 1761 1174, Department of Urology, Shandong Provincial Qianfoshan Hospital, Cheeloo College of Medicine, , Shandong University, ; Jinan, Shandong 250021 China
                Article
                3240
                10.1038/s41419-020-03240-z
                7721747
                33288752
                fa6e0ce6-548b-410e-adbd-63bf12e1d060
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 23 September 2020
                : 12 November 2020
                : 13 November 2020
                Funding
                Funded by: Shandong Key Research and Development Plan, grant No. 2019GSF108263
                Funded by: Shandong Province Natural Science Grant, grant No. ZR2016HM32
                Funded by: Shandong Province medical and health science and technology development plan, grant No.2016WS0498
                Funded by: National Natural Science Foundation of China, grant No. 81602226. China Postdoctoral Science Foundation, grant No.2016M590641.
                Funded by: Shandong Key Research and Development Plan, grant No. 2018GSF118127
                Funded by: Shandong Key Research and Development Plan, grant No.2018GSF118068
                Funded by: National Natural Science Foundation of China, grant No.81572534
                Funded by: National Natural Science Foundation of China, grant No. 81202016. Medical and Health Technology Development Project of Shandong Province, China, grant No. 2016WS0424. China Postdoctoral Science Foundation, grant No.2016M590638.
                Categories
                Article
                Custom metadata
                © The Author(s) 2020

                Cell biology
                bladder cancer,long non-coding rnas,oncogenesis
                Cell biology
                bladder cancer, long non-coding rnas, oncogenesis

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