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      EvolvingSTEM: a microbial evolution-in-action curriculum that enhances learning of evolutionary biology and biotechnology

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          Abstract

          Evolution is a central, unifying theory for all of life science, yet the subject is poorly represented in most secondary-school biology courses, especially in the United States. One challenge to learning evolution is that it is taught as a conceptual, retrospective subject with few tangible outcomes for students. These typical passive learning strategies lead to student disengagement with the material and misunderstanding of evolutionary concepts. To promote greater investment and comprehension, we developed EvolvingSTEM, an inquiry-based laboratory curriculum that demonstrates concepts of natural selection, heredity, and ecological diversity through experimental evolution of a benign bacterium. Students transfer populations of Pseudomonas fluorescens growing on plastic beads, which selects for biofilm formation and mutants with new, conspicuous phenotypes. We introduced our curriculum to four introductory high school biology classes alongside their standard curriculum materials and found that students who learned evolution through EvolvingSTEM scored significantly better on a common assessment targeted to Next Generation Science Standards than students taught only the standard curriculum. This latter group subsequently achieved similar scores once they too completed our curriculum. Our work demonstrates that inquiry-based, hands-on experiences with evolving bacterial populations can greatly enhance student learning of evolutionary concepts.

          Electronic supplementary material

          The online version of this article (10.1186/s12052-019-0103-4) contains supplementary material, which is available to authorized users.

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          Tackling antibiotic resistance: the environmental framework.

          Antibiotic resistance is a threat to human and animal health worldwide, and key measures are required to reduce the risks posed by antibiotic resistance genes that occur in the environment. These measures include the identification of critical points of control, the development of reliable surveillance and risk assessment procedures, and the implementation of technological solutions that can prevent environmental contamination with antibiotic resistant bacteria and genes. In this Opinion article, we discuss the main knowledge gaps, the future research needs and the policy and management options that should be prioritized to tackle antibiotic resistance in the environment.
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            Climate change, adaptation, and phenotypic plasticity: the problem and the evidence

            Many studies have recorded phenotypic changes in natural populations and attributed them to climate change. However, controversy and uncertainty has arisen around three levels of inference in such studies. First, it has proven difficult to conclusively distinguish whether phenotypic changes are genetically based or the result of phenotypic plasticity. Second, whether or not the change is adaptive is usually assumed rather than tested. Third, inferences that climate change is the specific causal agent have rarely involved the testing – and exclusion – of other potential drivers. We here review the various ways in which the above inferences have been attempted, and evaluate the strength of support that each approach can provide. This methodological assessment sets the stage for 11 accompanying review articles that attempt comprehensive syntheses of what is currently known – and not known – about responses to climate change in a variety of taxa and in theory. Summarizing and relying on the results of these reviews, we arrive at the conclusion that evidence for genetic adaptation to climate change has been found in some systems, but is still relatively scarce. Most importantly, it is clear that more studies are needed – and these must employ better inferential methods – before general conclusions can be drawn. Overall, we hope that the present paper and special issue provide inspiration for future research and guidelines on best practices for its execution.
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              Adaptive radiation in a heterogeneous environment.

              Successive adaptive radiations have played a pivotal role in the evolution of biological diversity. The effects of adaptive radiation are often seen, but the underlying causes are difficult to disentangle and remain unclear. Here we examine directly the role of ecological opportunity and competition in driving genetic diversification. We use the common aerobic bacterium Pseudomonas fluorescens, which evolves rapidly under novel environmental conditions to generate a large repertoire of mutants. When provided with ecological opportunity (afforded by spatial structure), identical populations diversify morphologically, but when ecological opportunity is restricted there is no such divergence. In spatially structured environments, the evolution of variant morphs follows a predictable sequence and we show that competition among the newly evolved niche-specialists maintains this variation. These results demonstrate that the elementary processes of mutation and selection alone are sufficient to promote rapid proliferation of new designs and support the theory that trade-offs in competitive ability drive adaptive radiation.
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                Author and article information

                Contributors
                vaughn.cooper@pitt.edu
                Journal
                Evolution (N Y)
                Evolution (N Y)
                Evolution
                Springer US (New York )
                1936-6426
                1936-6434
                24 April 2019
                24 April 2019
                2019
                : 12
                : 1
                : 12
                Affiliations
                [1 ]ISNI 0000 0004 1936 9000, GRID grid.21925.3d, Department of Microbiology and Molecular Genetics, , University of Pittsburgh, School of Medicine, ; Pittsburgh, PA USA
                [2 ]ISNI 0000 0004 1936 9000, GRID grid.21925.3d, Center for Evolutionary Biology and Medicine, University of Pittsburgh, School of Medicine, ; Pittsburgh, PA USA
                [3 ]ISNI 0000 0001 2192 7145, GRID grid.167436.1, Department of Molecular, Cellular, and Biomedical Sciences, , University of New Hampshire, ; Durham, NH USA
                [4 ]Winnacunnet High School, Hampton, NH USA
                Author information
                http://orcid.org/0000-0001-7726-0765
                Article
                103
                10.1186/s12052-019-0103-4
                7328067
                0584e544-cf53-4612-afa4-1b692b7f11f1
                © The Author(s) 2019

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 14 January 2019
                : 29 March 2019
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/100000155, Division of Environmental Biology;
                Award ID: DEB-0845851
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000104, National Aeronautics and Space Administration;
                Award ID: CAN-7NNA15BB04A
                Award Recipient :
                Categories
                Curriculum and Education
                Custom metadata
                © The Author(s) 2019

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