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      SCF AtPP2-B11 modulates ABA signaling by facilitating SnRK2.3 degradation in Arabidopsis thaliana

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          Abstract

          The phytohormone abscisic acid (ABA) is an essential part of the plant response to abiotic stressors such as drought. Upon the perception of ABA, pyrabactin resistance (PYR)/PYR1-like (PYL)/regulatory components of ABA receptor (RCAR) proteins interact with co-receptor protein phosphatase type 2Cs to permit activation Snf1-related protein kinase2 (SnRK2) kinases, which switch on ABA signaling by phosphorylating various target proteins. Thus, SnRK2 kinases are central regulators of ABA signaling. However, the mechanisms that regulate SnRK2 degradation remain elusive. Here, we show that SnRK2.3 is degradated by 26S proteasome system and ABA promotes its degradation. We found that SnRK2.3 interacts with AtPP2-B11 directly. AtPP2-B11 is an F-box protein that is part of a SKP1/Cullin/F-box E3 ubiquitin ligase complex that negatively regulates plant responses to ABA by specifically promoting the degradation of SnRK2.3. AtPP2-B11 was induced by ABA, and the knockdown of AtPP2-B11 expression markedly increased the ABA sensitivity of plants during seed germination and postgerminative development. Overexpression of AtPP2-B11 does not affect ABA sensitivity, but inhibits the ABA hypersensitive phenotypes of SnRK2. 3 overexpression lines. These results reveal a novel mechanism through which AtPP2-B11 specifically degrades SnRK2.3 to attenuate ABA signaling and the abiotic stress response in Arabidopsis.

          Author summary

          The phytohormone ABA plays critical roles in both plant growth and development and the response to environmental stimuli. The SnRK2s are important components of the PYR/PYL-ABA-PP2C regulatory machine which activate a set of bZIP transcription factors and ion transporters. However, the regulation of SnRK2 turnover is poorly understood. In this work, we show that SnRK2s are degraded by 26S proteasome and ABA promotes SnRK2.3 degradation. We also show that an F-box protein, AtPP2-B11, interacts with Arabidopsis Skp1-like protein ASK1 and ASK2, is a component of a SKP1/Cullin/F-box E3 ubiquitin ligase complex. AtPP2-B11 interacts and regulates the degradation of SnRK2.3 specifically. AtPP2-B11 is induced by ABA and knockdown of AtPP2-B11 expression markedly increases ABA sensitivity of plants during seed germination and post-germinative development. Overexpression of AtPP2-B11 does not affect ABA sensitivity, but inhibits the ABA hypersensitive phenotypes of SnRK2. 3 overexpression lines. These results reveal a mechanism through which AtPP2-B11 specifically degrades SnRK2.3 to attenuate the ABA signaling and plant responses to abiotic stress.

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          Most cited references32

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          Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins.

          Type 2C protein phosphatases (PP2Cs) are vitally involved in abscisic acid (ABA) signaling. Here, we show that a synthetic growth inhibitor called pyrabactin functions as a selective ABA agonist. Pyrabactin acts through PYRABACTIN RESISTANCE 1 (PYR1), the founding member of a family of START proteins called PYR/PYLs, which are necessary for both pyrabactin and ABA signaling in vivo. We show that ABA binds to PYR1, which in turn binds to and inhibits PP2Cs. We conclude that PYR/PYLs are ABA receptors functioning at the apex of a negative regulatory pathway that controls ABA signaling by inhibiting PP2Cs. Our results illustrate the power of the chemical genetic approach for sidestepping genetic redundancy.
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            Regulators of PP2C phosphatase activity function as abscisic acid sensors.

            The plant hormone abscisic acid (ABA) acts as a developmental signal and as an integrator of environmental cues such as drought and cold. Key players in ABA signal transduction include the type 2C protein phosphatases (PP2Cs) ABI1 and ABI2, which act by negatively regulating ABA responses. In this study, we identify interactors of ABI1 and ABI2 which we have named regulatory components of ABA receptor (RCARs). In Arabidopsis, RCARs belong to a family with 14 members that share structural similarity with class 10 pathogen-related proteins. RCAR1 was shown to bind ABA, to mediate ABA-dependent inactivation of ABI1 or ABI2 in vitro, and to antagonize PP2C action in planta. Other RCARs also mediated ABA-dependent regulation of ABI1 and ABI2, consistent with a combinatorial assembly of receptor complexes.
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              The ubiquitin-26S proteasome system at the nexus of plant biology.

              Plants, like other eukaryotes, rely on proteolysis to control the abundance of key regulatory proteins and enzymes. Strikingly, genome-wide studies have revealed that the ubiquitin-26S proteasome system (UPS) in particular is an exceedingly large and complex route for protein removal, occupying nearly 6% of the Arabidopsis thaliana proteome. But why is the UPS so pervasive in plants? Data accumulated over the past few years now show that it targets numerous intracellular regulators that have central roles in hormone signalling, the regulation of chromatin structure and transcription, tailoring morphogenesis, responses to environmental challenges, self recognition and battling pathogens.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: InvestigationRole: MethodologyRole: SoftwareRole: Writing – original draft
                Role: ConceptualizationRole: Formal analysisRole: SupervisionRole: Writing – review & editing
                Role: InvestigationRole: MethodologyRole: Software
                Role: Data curationRole: Methodology
                Role: Data curationRole: Methodology
                Role: Software
                Role: Software
                Role: ConceptualizationRole: Funding acquisitionRole: SupervisionRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Genet
                PLoS Genet
                plos
                plosgen
                PLoS Genetics
                Public Library of Science (San Francisco, CA USA )
                1553-7390
                1553-7404
                7 August 2017
                August 2017
                : 13
                : 8
                : e1006947
                Affiliations
                [1 ] State Key Laboratory of Agricultural Microbiology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, P.R., China
                [2 ] Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Shijiazhuang, Hebei, P.R., China
                [3 ] University of Chinese Academy of Sciences, Beijing, P.R., China
                Wake Forest University, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                Article
                PGENETICS-D-17-00800
                10.1371/journal.pgen.1006947
                5560758
                28787436
                0f729516-0247-48aa-8142-612ce5829088
                © 2017 Cheng et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 19 April 2017
                : 27 July 2017
                Page count
                Figures: 9, Tables: 0, Pages: 25
                Funding
                Funded by: Huazhong Agricultural University Scientific & Technological Self-innovation Foundation
                Award ID: 2015RC014
                Award Recipient :
                Funded by: National Science Foundation
                Award ID: 31230050
                Award Recipient :
                Funded by: National Science Foundation
                Award ID: 31200220
                Award Recipient :
                Work was supported by Huazhong Agricultural University Scientific & Technological Self-innovation Foundation (2015RC014) and National natural science foundation of China (31200220 and 31230050). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Organisms
                Plants
                Seedlings
                Research and Analysis Methods
                Experimental Organism Systems
                Model Organisms
                Arabidopsis Thaliana
                Research and Analysis Methods
                Model Organisms
                Arabidopsis Thaliana
                Biology and Life Sciences
                Organisms
                Plants
                Brassica
                Arabidopsis Thaliana
                Research and Analysis Methods
                Experimental Organism Systems
                Plant and Algal Models
                Arabidopsis Thaliana
                Research and Analysis Methods
                Extraction Techniques
                Protein Extraction
                Biology and Life Sciences
                Biochemistry
                Proteins
                Luminescent Proteins
                Yellow Fluorescent Protein
                Biology and Life Sciences
                Molecular Biology
                Molecular Biology Techniques
                Molecular Biology Assays and Analysis Techniques
                Gene Expression and Vector Techniques
                Hyperexpression Techniques
                Research and Analysis Methods
                Molecular Biology Techniques
                Molecular Biology Assays and Analysis Techniques
                Gene Expression and Vector Techniques
                Hyperexpression Techniques
                Biology and Life Sciences
                Biochemistry
                Enzymology
                Enzymes
                Ligases
                Biology and Life Sciences
                Biochemistry
                Proteins
                Enzymes
                Ligases
                Biology and Life Sciences
                Biochemistry
                Plant Biochemistry
                Biology and Life Sciences
                Plant Science
                Plant Biochemistry
                Biology and Life Sciences
                Cell Biology
                Signal Transduction
                Cell Signaling
                Signaling Cascades
                Protein Kinase Signaling Cascade
                Custom metadata
                vor-update-to-uncorrected-proof
                2017-08-17
                All relevant data are within the paper and its Supporting Information files.

                Genetics
                Genetics

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