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      Atlas of Genetics and Cytogenetics in Oncology and Haematology in 2013

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          Abstract

          The Atlas of Genetics and Cytogenetics in Oncology and Haematology ( http://AtlasGeneticsOncology.org) is a peer-reviewed internet journal/encyclopaedia/database focused on genes implicated in cancer, cytogenetics and clinical entities in cancer and cancer-prone hereditary diseases. The main goal of the Atlas is to provide review articles that describe complementary topics, namely, genes, genetic abnormalities, histopathology, clinical diagnoses and a large iconography. This description, which was historically based on karyotypic abnormalities and in situ hybridization (fluorescence in situ hybridization) techniques, now benefits from comparative genomic hybridization and massive sequencing, uncovering a tremendous amount of genetic rearrangements. As the Atlas combines different types of information (genes, genetic abnormalities, histopathology, clinical diagnoses and external links), its content is currently unique. The Atlas is a cognitive tool for fundamental and clinical research and has developed into an encyclopaedic work. In clinical practice, it contributes to the cytogenetic diagnosis and may guide treatment decision making, particularly regarding rare diseases (because they are numerous and are frequently encountered). Readers as well as the authors of the Atlas are researchers and/or clinicians.

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          Most cited references15

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          The UCSC Genome Browser database: extensions and updates 2011

          The University of California Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. The Browser is an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic data sets. In the past year, the local database has been updated with four new species assemblies, and we anticipate another four will be released by the end of 2011. Further, a large number of annotation tracks have been either added, updated by contributors, or remapped to the latest human reference genome. Among these are new phenotype and disease annotations, UCSC genes, and a major dbSNP update, which required new visualization methods. Growing beyond the local database, this year we have introduced ‘track data hubs’, which allow the Genome Browser to provide access to remotely located sets of annotations. This feature is designed to significantly extend the number and variety of annotation tracks that are publicly available for visualization and analysis from within our site. We have also introduced several usability features including track search and a context-sensitive menu of options available with a right-click anywhere on the Browser's image.
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            Atlas of Genetics and Cytogenetics in Oncology and Haematology, year 2003.

            The 'Atlas of Genetics and Cytogenetics in Oncology and Haematology' (http://www.infobiogen.fr/services/chromcancer) contains concise and updated cards on genes involved in cancer, cytogenetics and clinical entities in oncology, and cancer-prone diseases, a portal towards genetics/cancer, and teaching materials in genetics. This database is made for and by researchers and clinicians, who are encouraged to contribute. The Atlas is part of the genome project and it participates in research on cancer epidemiology.
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              Atlas of genetics and cytogenetics in oncology and haematology, an interactive database.

              The 'Atlas of Genetics and Cytogenetics in Oncology and Haematology' (http://www.infobiogen.fr/services/chromcancer ) is a database devoted to chromosome abnormalities in cancer, cancer-prone diseases and genes involved in cancer. Information presented in each page is concise and updated. This database is made for and by: cytogeneticists, molecular biologists, clinicians in oncology and in haematology, and pathologists, who are encouraged to contribute.
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                Author and article information

                Journal
                Nucleic Acids Res
                Nucleic Acids Res
                nar
                nar
                Nucleic Acids Research
                Oxford University Press
                0305-1048
                1362-4962
                January 2013
                January 2013
                17 November 2012
                17 November 2012
                : 41
                : D1 , Database issue
                : D920-D924
                Affiliations
                1‘Atlas in Poitiers Editorial Group’, 2Genetics, Department Medical Information, University and Hospital of Poitiers, INSERM U 935, 86021 Poitiers, France, 3Génétique des Tumeurs, 985 INSERM, Institut Gustave Roussy, 94805 Villejuif, France, 4HIA Val de Grâce, 75005 Paris, France, 5INIST-CNRS, 95310 Nancy, France, 6Laboratoire Cerba, 95310 Cergy-Pontoise, France, 7CRITT Informatique, 86360 Poitiers, France and 8Cytogenetics, CHU Saint Antoine, 75012 Paris, France
                Author notes
                *To whom correspondence should be addressed. Tel: +33 5 49 44 45 46 or +33 5 49 45 47 67; Email: jean-loup.huret@ 123456chu-poitiers.fr or jlhuret@ 123456univ-poitiers.fr
                Article
                gks1082
                10.1093/nar/gks1082
                3531131
                23161685
                1fd9ea8f-40ad-4c6b-8422-cfc7621683a2
                © The Author(s) 2012. Published by Oxford University Press.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.

                History
                : 7 September 2012
                : 15 October 2012
                : 16 October 2012
                Page count
                Pages: 5
                Categories
                Articles

                Genetics
                Genetics

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