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      Association between gene polymorphisms of voltage-dependent Ca 2+ channels and hypertension in the Dai people of China: a case-control study

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          Abstract

          Background

          Abnormal calcium homeostasis related to the development of hypertension. As the key regulator of intracellular calcium concentration, voltage-dependent calcium channels (VDCCs), the variations in these genes may have important effects on the development of hypertension. Here we evaluate VDCCs variability with respect to hypertension in the Dai ethnic group of China.

          Methods

          A total of 1034 samples from Dai individuals were collected, of which 495 were used as cases, and 539 were used as controls. Blood pressure was measured using a standard mercury measurement method, three times with a rest for 5 min, and the average was used for analyses. Seventeen single nucleotide polymorphisms (SNPs) in the four protein-coding genes ( CACNA1A, CACNA1C, CACNA1S, CACNB2) of VDCCs were identified by multiplex PCR-SNP typing technique. Chi-square tests and regression models were used to analyse the associations of SNPs with hypertension.

          Results

          The results of chi-square tests showed that the allele frequencies of 5 SNPs were significantly different between the case and the control groups ( P < 0.05), but the statistical significance was lost after Bonferroni’s correction. However, after adjusting for BMI, age, sex and other factors by logistic regression analyses, the results showed that 5 SNPs consistent with chi-square tests (rs2365293, rs17539088, rs16917217, rs61839222 and rs10425859) were still statistically positive.

          Conclusions

          This finding suggested that the significant association of these SNPs with hypertension may be noteworthy in future studies.

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          Most cited references25

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          Burden of hypertension in China: A nationally representative survey of 174,621 adults.

          Hypertension is a major cause of cardiovascular disease. Periodic nationwide surveys are essential for monitoring secular trend of hypertension and its control in population. We assessed prevalence of hypertension and related awareness, treatment and control rates in Chinese adults in 2013-14.
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            Haploview: Visualization and analysis of SNP genotype data.

            J. Barrett (2009)
            Association studies involve accessing, parsing, generating, and analyzing large volumes of data, often carried out in many steps over many months. Large-scale surveys of genetic variation, such as the International HapMap Project, and rapidly increasing volumes of single-nucleotide polymorphism (SNP) genotyping data have created exciting opportunities for association studies. However, they have further exacerbated the difficulty of curating and analyzing such data. Haploview is a program developed in Mark Daly's lab at the Broad Institute of MIT and Harvard, which is designed to bundle many everyday analysis tasks into one easy-to-use package. Haploview has several features that are useful throughout different phases of association studies. Several of these features are illustrated in this article by following a hypothetical association study from design to execution. Haploview is used to (1) analyze HapMap data and choose tag-SNPs, (2) evaluate the quality of disease genotype data, (3) test for association, and (4) evaluate a region for follow-up of a positive association.
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              Global burden of cardiovascular disease and stroke: hypertension at the core.

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                Author and article information

                Contributors
                sunhao@imbcams.com.cn , sunhao@km.cams.cn
                zyang@imbcams.com.cn
                Journal
                BMC Med Genet
                BMC Med. Genet
                BMC Medical Genetics
                BioMed Central (London )
                1471-2350
                28 February 2020
                28 February 2020
                2020
                : 21
                : 44
                Affiliations
                [1 ]ISNI 0000 0004 0632 3409, GRID grid.410318.f, Institute of Medical Biology Chinese Academy of Medical Sciences, ; Kunming, China
                [2 ]Department of General Surgery of the 2nd People Hospital of Yunnan Province, Kunming, China
                Author information
                http://orcid.org/0000-0003-4488-5579
                Article
                982
                10.1186/s12881-020-0982-9
                7049211
                32111194
                5cce410d-b7ec-4930-8fe8-a0d2c6f8ba56
                © The Author(s). 2020

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 5 December 2019
                : 20 February 2020
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100001809, National Natural Science Foundation of China;
                Award ID: 31571304
                Award Recipient :
                Funded by: Yunnan Basic Research Program Key Project
                Award ID: 2018FA010
                Award Recipient :
                Categories
                Research Article
                Custom metadata
                © The Author(s) 2020

                Genetics
                voltage-dependent calcium channels,polymorphism,hypertension,dai people
                Genetics
                voltage-dependent calcium channels, polymorphism, hypertension, dai people

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