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      Structural organization of the C1a-e-c supercomplex within the ciliary central apparatus

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          Abstract

          Fu et al. use a WT versus mutant comparison and cryo-electron tomography of Chlamydomonas flagella to identify central apparatus (CA) subunits and visualize their location in the native 3D CA structure. This study provides a better understanding of the CA and how it regulates ciliary motility.

          Abstract

          Nearly all motile cilia contain a central apparatus (CA) composed of two connected singlet microtubules with attached projections that play crucial roles in regulating ciliary motility. Defects in CA assembly usually result in motility-impaired or paralyzed cilia, which in humans causes disease. Despite their importance, the protein composition and functions of the CA projections are largely unknown. Here, we integrated biochemical and genetic approaches with cryo-electron tomography to compare the CA of wild-type Chlamydomonas with CA mutants. We identified a large (>2 MD) complex, the C1a-e-c supercomplex, that requires the PF16 protein for assembly and contains the CA components FAP76, FAP81, FAP92, and FAP216. We localized these subunits within the supercomplex using nanogold labeling and show that loss of any one of them results in impaired ciliary motility. These data provide insight into the subunit organization and 3D structure of the CA, which is a prerequisite for understanding the molecular mechanisms by which the CA regulates ciliary beating.

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          Most cited references58

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          Volta potential phase plate for in-focus phase contrast transmission electron microscopy.

          We describe a phase plate for transmission electron microscopy taking advantage of a hitherto-unknown phenomenon, namely a beam-induced Volta potential on the surface of a continuous thin film. The Volta potential is negative, indicating that it is not caused by beam-induced electrostatic charging. The film must be heated to ∼ 200 °C to prevent contamination and enable the Volta potential effect. The phase shift is created "on the fly" by the central diffraction beam eliminating the need for precise phase plate alignment. Images acquired with the Volta phase plate (VPP) show higher contrast and unlike Zernike phase plate images no fringing artifacts. Following installation into the microscope, the VPP has an initial settling time of about a week after which the phase shift behavior becomes stable. The VPP has a long service life and has been used for more than 6 mo without noticeable degradation in performance. The mechanism underlying the VPP is the same as the one responsible for the degradation over time of the performance of thin-film Zernike phase plates, but in the VPP it is used in a constructive way. The exact physics and/or chemistry behind the process causing the Volta potential are not fully understood, but experimental evidence suggests that radiation-induced surface modification combined with a chemical equilibrium between the surface and residual gases in the vacuum play an important role.
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            Clustering and variance maps for cryo-electron tomography using wedge-masked differences.

            Cryo-electron tomography provides 3D imaging of frozen hydrated biological samples with nanometer resolution. Reconstructed volumes suffer from low signal-to-noise-ratio (SNR)(1) and artifacts caused by systematically missing tomographic data. Both problems can be overcome by combining multiple subvolumes with varying orientations, assuming they contain identical structures. Clustering (unsupervised classification) is required to ensure or verify population homogeneity, but this process is complicated by the problems of poor SNR and missing data, the factors that led to consideration of multiple subvolumes in the first place. Here, we describe a new approach to clustering and variance mapping in the face of these difficulties. The combined subvolume is taken as an estimate of the true subvolume, and the effect of missing data is computed for individual subvolumes. Clustering and variance mapping then proceed based on differences between expected and observed subvolumes. We show that this new method is faster and more accurate than two current, widely used techniques. Copyright © 2011 Elsevier Inc. All rights reserved.
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              Adenosine triphosphate-induced sliding of tubules in trypsin-treated flagella of sea-urchin sperm.

              Axonemes isolated from the sperm of the sea urchin, Tripneustes gratilla, were briefly digested with trypsin. The digested axonemes retained their typical structure of a cylinder of nine doublet-tubules surrounding a pair of single tubules. The digestion modified the axonemes so that the subsequent addition of 0.1 mM ATP caused them to disintegrate actively into individual tubules and groups. The nucleotide specificity and divalent-cation requirements of this disintegration reaction paralleled those of flagellar motility, suggesting that the underlying mechanisms were closely related. Observations by dark-field microscopy showed that the disintegration resulted from active sliding between groups of the outer doublet-tubules, together with a tendency for the partially disintegrated axoneme to coil into a helix. Our evidence supports the hypothesis that the propagated bending waves of live-sperm tails are the result of ATP-induced shearing forces between outer tubules which, when resisted by the native structure, lead to localized sliding and generate an active bending moment.
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                Author and article information

                Journal
                J Cell Biol
                J. Cell Biol
                jcb
                jcb
                The Journal of Cell Biology
                Rockefeller University Press
                0021-9525
                1540-8140
                02 December 2019
                31 October 2019
                : 218
                : 12
                : 4236-4251
                Affiliations
                [1 ]Departments of Cell Biology and Biophysics, University of Texas Southwestern Medical Center, Dallas, TX
                [2 ]Department of Radiology, Division of Cell Biology and Imaging, University of Massachusetts Medical School, Worcester, MA
                [3 ]Department of Biological Sciences, Dartmouth College, Hanover, NH
                Author notes
                Correspondence to Daniela Nicastro: daniela.nicastro@ 123456utsouthwestern.edu
                [*]

                G. Fu and L. Zhao contributed equally to this paper.

                K. Song’s present address is Cryo-EM Core Facility, University of Massachusetts Medical School, Worcester, MA.

                Author information
                https://orcid.org/0000-0002-5174-7011
                https://orcid.org/0000-0002-7038-675X
                https://orcid.org/0000-0002-9497-9218
                https://orcid.org/0000-0002-0122-7173
                Article
                201906006
                10.1083/jcb.201906006
                6891083
                31672705
                68ca75bc-5b4a-408c-9241-4176276d09ec
                © 2019 Fu et al.

                This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms/). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 4.0 International license, as described at https://creativecommons.org/licenses/by-nc-sa/4.0/).

                History
                : 03 June 2019
                : 13 September 2019
                : 23 September 2019
                Page count
                Pages: 16
                Funding
                Funded by: Cancer Prevention and Research Institute of Texas, DOI https://doi.org/10.13039/10.13039/100004917;
                Award ID: RP170644
                Funded by: National Institutes of Health, DOI https://doi.org/10.13039/100000002;
                Award ID: R01 GM083122
                Award ID: R35 GM122574
                Award ID: R01 GM112050
                Funded by: Cancer Prevention and Research Institute of Texas, DOI https://doi.org/10.13039/100004917;
                Award ID: RR140082
                Categories
                Research Articles
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                Cell biology
                Cell biology

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