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      A suppressor of a wtf poison-antidote meiotic driver acts via mimicry of the driver’s antidote

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          Abstract

          Meiotic drivers are selfish alleles that subvert gametogenesis to increase their transmission into progeny. Drivers impose a fitness cost, putting pressure on the genome to evolve suppressors. Here we investigate the wtf gene family from Schizosaccharomyces pombe, previously shown to contain meiotic drivers in wild isolates. We discovered that wtf13 found in lab stocks is a meiotic driver. wtf13 kills spores that do not inherit it by generating both a diffusible poison and a spore-specific antidote. Additionally, we demonstrate that wtf13 is suppressed by another wtf gene, wtf18-2, that arose spontaneously in the lab and makes only an antidote. Wtf18-2 does not act indiscriminately to prevent spore destruction. Instead, it rescues only the spores that inherit wtf18-2. In this way, wtf18-2 selfishly gains a transmission advantage of its own while dampening the drive of wtf13. This establishes a novel paradigm for meiotic drive suppressors and provides insight into the mechanisms and evolution of drive systems.

          Author summary

          Killer meiotic drivers are selfish genes that cause infertility by destroying the gametes (e.g. sperm) that do not inherit them. This allows them to be transmitted into up to 100% of the surviving gametes. Because of the significant fitness cost that these killer meiotic drivers impose to the organism, suppressors of drive are expected to evolve. We and others recently discovered that members of the wtf gene family in natural isolates of fission yeast are killer meiotic drivers. These genes generate a poison to kill gametes, but rescue those that inherit the driver with an antidote. In this work, we discovered that an additional wtf gene, wtf13 found in intensely studied lab strains is also a meiotic driver. This driver is only capable of driving in the absence of another wtf gene, wtf18-2, which works by mimicking the antidote of wtf13. By protecting only the spores that inherit the gene, wtf18-2 selfishly gains a transmission advantage of its own, establishing a novel paradigm for drive suppressors.

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          Most cited references57

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          Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae.

          Disruption-deletion cassettes are powerful tools used to study gene function in many organisms, including Saccharomyces cerevisiae. Perhaps the most widely useful of these are the heterologous dominant drug resistance cassettes, which use antibiotic resistance genes from bacteria and fungi as selectable markers. We have created three new dominant drug resistance cassettes by replacing the kanamycin resistance (kan(r)) open reading frame from the kanMX3 and kanMX4 disruption-deletion cassettes (Wach et al., 1994) with open reading frames conferring resistance to the antibiotics hygromycin B (hph), nourseothricin (nat) and bialaphos (pat). The new cassettes, pAG25 (natMX4), pAG29 (patMX4), pAG31 (patMX3), pAG32 (hphMX4), pAG34 (hphMX3) and pAG35 (natMX3), are cloned into pFA6, and so are in all other respects identical to pFA6-kanMX3 and pFA6-kanMX4. Most tools and techniques used with the kanMX plasmids can also be used with the hph, nat and patMX containing plasmids. These new heterologous dominant drug resistance cassettes have unique antibiotic resistance phenotypes and do not affect growth when inserted into the ho locus. These attributes make the cassettes ideally suited for creating S. cerevisiae strains with multiple mutations within a single strain. Copyright 1999 John Wiley & Sons, Ltd.
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            Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae.

            An important recent advance in the functional analysis of Saccharomyces cerevisiae genes is the development of the one-step PCR-mediated technique for deletion and modification of chromosomal genes. This method allows very rapid gene manipulations without requiring plasmid clones of the gene of interest. We describe here a new set of plasmids that serve as templates for the PCR synthesis of fragments that allow a variety of gene modifications. Using as selectable marker the S. cerevisiae TRP1 gene or modules containing the heterologous Schizosaccharomyces pombe his5+ or Escherichia coli kan(r) gene, these plasmids allow gene deletion, gene overexpression (using the regulatable GAL1 promoter), C- or N-terminal protein tagging [with GFP(S65T), GST, or the 3HA or 13Myc epitope], and partial N- or C-terminal deletions (with or without concomitant protein tagging). Because of the modular nature of the plasmids, they allow efficient and economical use of a small number of PCR primers for a wide variety of gene manipulations. Thus, these plasmids should further facilitate the rapid analysis of gene function in S. cerevisiae.
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              Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein.

              Fluorescent proteins are genetically encoded, easily imaged reporters crucial in biology and biotechnology. When a protein is tagged by fusion to a fluorescent protein, interactions between fluorescent proteins can undesirably disturb targeting or function. Unfortunately, all wild-type yellow-to-red fluorescent proteins reported so far are obligately tetrameric and often toxic or disruptive. The first true monomer was mRFP1, derived from the Discosoma sp. fluorescent protein "DsRed" by directed evolution first to increase the speed of maturation, then to break each subunit interface while restoring fluorescence, which cumulatively required 33 substitutions. Although mRFP1 has already proven widely useful, several properties could bear improvement and more colors would be welcome. We report the next generation of monomers. The latest red version matures more completely, is more tolerant of N-terminal fusions and is over tenfold more photostable than mRFP1. Three monomers with distinguishable hues from yellow-orange to red-orange have higher quantum efficiencies.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: VisualizationRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: Funding acquisitionRole: Project administrationRole: SupervisionRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Genet
                PLoS Genet
                plos
                plosgen
                PLoS Genetics
                Public Library of Science (San Francisco, CA USA )
                1553-7390
                1553-7404
                26 November 2018
                November 2018
                : 14
                : 11
                : e1007836
                Affiliations
                [1 ] Stowers Institute for Medical Research, Kansas City, MO, United States of America
                [2 ] Department of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, KS, United States of America
                University of Rochester, UNITED STATES
                Author notes

                I have read the journal's policy and the authors of this manuscript have the following competing interests: MABN and SEZ are inventors on patent application based on wtf killers. Patent application 834 serial 62/491,107. JJL declares no competing interests.

                Author information
                http://orcid.org/0000-0002-6554-8814
                http://orcid.org/0000-0003-4970-6269
                http://orcid.org/0000-0003-1867-986X
                Article
                PGENETICS-D-18-01789
                10.1371/journal.pgen.1007836
                6283613
                30475921
                919fc287-7762-43a3-b6c0-93bd36e93232
                © 2018 Bravo Núñez et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 10 September 2018
                : 16 November 2018
                Page count
                Figures: 8, Tables: 0, Pages: 29
                Funding
                This work was supported by the following awards to SEZ: The Stowers Institute for Medical Research ( https://www.stowers.org), March of Dimes Foundation Basil O'Connor Starter Scholar Research Award No. 5-FY18-58 ( https://www.marchofdimes.org), and the National Institutes of Health (NIH) under the award numbers R00GM114436 and DP2GM132936 ( https://www.nih.gov). MABN was also supported by NIH under award number F99CA234523. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Mycology
                Fungal Reproduction
                Fungal Spores
                Biology and Life Sciences
                Genetics
                Gene Types
                Suppressor Genes
                Biology and Life Sciences
                Genetics
                Genetic Loci
                Alleles
                Biology and Life Sciences
                Genetics
                Genetic Loci
                Biology and Life Sciences
                Toxicology
                Antidotes
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Toxicology
                Antidotes
                Biology and Life Sciences
                Molecular Biology
                Molecular Biology Techniques
                Artificial Gene Amplification and Extension
                Polymerase Chain Reaction
                Research and Analysis Methods
                Molecular Biology Techniques
                Artificial Gene Amplification and Extension
                Polymerase Chain Reaction
                Biology and Life Sciences
                Biochemistry
                Proteins
                Luminescent Proteins
                Yellow Fluorescent Protein
                Biology and Life Sciences
                Toxicology
                Toxic Agents
                Toxins
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Toxicology
                Toxic Agents
                Toxins
                Custom metadata
                vor-update-to-uncorrected-proof
                2018-12-06
                Original data underlying this manuscript can be accessed from the Stowers Original Data Repository at http://www.stowers.org/research/publications/libpb-1270.

                Genetics
                Genetics

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