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      Inhibition of G-protein signalling in cardiac dysfunction of intellectual developmental disorder with cardiac arrhythmia (IDDCA) syndrome

      research-article
      1 , 2 , 3 , 4 , 1 , 5 , 6 , 6 , 6 , 7 , 7 , 8 , 8 , 8 , 9 , 10 , 2 , 11 , 12 , 11 , 13 , SYNAPS Study Group, 14 , 1 , 14 , 2 , 2 , 2 , 15 , 16 , 2 , 1 ,
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      Journal of Medical Genetics
      BMJ Publishing Group
      GNB5variants , Gnb5-null mouse models , IDDCA, cardiac conduction anomalies

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          Abstract

          Background

          Pathogenic variants of GNB5 encoding the β 5 subunit of the guanine nucleotide-binding protein cause IDDCA syndrome, an autosomal recessive neurodevelopmental disorder associated with cognitive disability and cardiac arrhythmia, particularly severe bradycardia.

          Methods

          We used echocardiography and telemetric ECG recordings to investigate consequences of Gnb5 loss in mouse.

          Results

          We delineated a key role of Gnb5 in heart sinus conduction and showed that Gnb5-inhibitory signalling is essential for parasympathetic control of heart rate (HR) and maintenance of the sympathovagal balance. Gnb5 −/− mice were smaller and had a smaller heart than Gnb5 +/+ and Gnb5 +/− , but exhibited better cardiac function. Lower autonomic nervous system modulation through diminished parasympathetic control and greater sympathetic regulation resulted in a higher baseline HR in Gnb5 −/− mice. In contrast, Gnb5 −/− mice exhibited profound bradycardia on treatment with carbachol, while sympathetic modulation of the cardiac stimulation was not altered. Concordantly, transcriptome study pinpointed altered expression of genes involved in cardiac muscle contractility in atria and ventricles of knocked-out mice. Homozygous Gnb5 loss resulted in significantly higher frequencies of sinus arrhythmias. Moreover, we described 13 affected individuals, increasing the IDDCA cohort to 44 patients.

          Conclusions

          Our data demonstrate that loss of negative regulation of the inhibitory G-protein signalling causes HR perturbations in Gnb5 /− mice, an effect mainly driven by impaired parasympathetic activity. We anticipate that unravelling the mechanism of Gnb5 signalling in the autonomic control of the heart will pave the way for future drug screening.

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          Most cited references86

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          Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

          In comparative high-throughput sequencing assays, a fundamental task is the analysis of count data, such as read counts per gene in RNA-seq, for evidence of systematic changes across experimental conditions. Small replicate numbers, discreteness, large dynamic range and the presence of outliers require a suitable statistical approach. We present DESeq2, a method for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates. This enables a more quantitative analysis focused on the strength rather than the mere presence of differential expression. The DESeq2 package is available at http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html. Electronic supplementary material The online version of this article (doi:10.1186/s13059-014-0550-8) contains supplementary material, which is available to authorized users.
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            STAR: ultrafast universal RNA-seq aligner.

            Accurate alignment of high-throughput RNA-seq data is a challenging and yet unsolved problem because of the non-contiguous transcript structure, relatively short read lengths and constantly increasing throughput of the sequencing technologies. Currently available RNA-seq aligners suffer from high mapping error rates, low mapping speed, read length limitation and mapping biases. To align our large (>80 billon reads) ENCODE Transcriptome RNA-seq dataset, we developed the Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, we experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy. STAR is implemented as a standalone C++ code. STAR is free open source software distributed under GPLv3 license and can be downloaded from http://code.google.com/p/rna-star/.
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              clusterProfiler: an R package for comparing biological themes among gene clusters.

              Increasing quantitative data generated from transcriptomics and proteomics require integrative strategies for analysis. Here, we present an R package, clusterProfiler that automates the process of biological-term classification and the enrichment analysis of gene clusters. The analysis module and visualization module were combined into a reusable workflow. Currently, clusterProfiler supports three species, including humans, mice, and yeast. Methods provided in this package can be easily extended to other species and ontologies. The clusterProfiler package is released under Artistic-2.0 License within Bioconductor project. The source code and vignette are freely available at http://bioconductor.org/packages/release/bioc/html/clusterProfiler.html.
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                Author and article information

                Journal
                J Med Genet
                J Med Genet
                jmedgenet
                jmg
                Journal of Medical Genetics
                BMJ Publishing Group (BMA House, Tavistock Square, London, WC1H 9JR )
                0022-2593
                1468-6244
                December 2021
                10 November 2020
                : 58
                : 12
                : 815-831
                Affiliations
                [1 ] departmentCenter for Integrative Genomics , University of Lausanne , Lausanne, Switzerland
                [2 ] departmentDepartment of Neuromuscular Disorders , Queen Square Institute of Neurology, University College London , London, UK
                [3 ] departmentCardiovascular Assessment Facility , University of Lausanne , Lausanne, Switzerland
                [4 ] departmentBioinformatics Competence Center , University of Lausanne , Lausanne, Switzerland
                [5 ] departmentService de Génétique , Hopital Femme Mere Enfant , Bron, France
                [6 ] departmentDepartment of Pediatric Neurology , The Children's Hospital and Institute of Child Health , Lahore, Pakistan
                [7 ] departmentDepartment of Paediatric Neurology , Children's Hospital and Institute of Child Health , Multan, Pakistan
                [8 ] departmentDepartment of Developmental-Behavioural Paediatrics , The Children's Hospital and Institute of Child Health , Lahore, Pakistan
                [9 ] departmentClinical Genetics Department, Human Genetics and Genome Research Division , National Research Centre , Cairo, Egypt
                [10 ] departmentDepartment of Neuroscience and Pediatrics , Howard Hughes Medical Institute , La Jolla, California, USA
                [11 ] departmentDepartment of Genetics, Faculty of Science , Shahid Chamran University of Ahvaz , Ahwaz, Iran (the Islamic Republic of)
                [12 ] departmentDepartment of Medical Genetics, Faculty of Medicine , Ahvaz Jondishapour University of Medical Sciences , Ahvaz, Iran (the Islamic Republic of)
                [13 ] departmentHealth Research Institute, Diabetes Research Center , Ahvaz Jundishapur University of medical Sciences , Ahvaz, Iran (the Islamic Republic of)
                [14 ] departmentService de Genetique , Hospices Civils de Lyon , Lyon, France
                [15 ] departmentMetabolic Diseases Branch/NIDDK , National Institutes of Health , Bethesda, MD, USA
                [16 ] departmentExperimental Cardiology Unit, Department of Cardiovascular Medicine , University of Lausanne , Lausanne, Switzerland
                Author notes
                [Correspondence to ] Professor Alexandre Reymond, Center for Integrative Genomics, University of Lausanne, Lausanne 1015, Switzerland; alexandre.reymond@ 123456unil.ch
                Author information
                http://orcid.org/0000-0001-7144-8425
                http://orcid.org/0000-0001-7840-0002
                http://orcid.org/0000-0002-0889-9220
                Article
                jmedgenet-2020-107015
                10.1136/jmedgenet-2020-107015
                8639930
                33172956
                dd2af87e-786f-4681-a32c-f7c780916f92
                © Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY. Published by BMJ.

                This is an open access article distributed in accordance with the Creative Commons Attribution 4.0 Unported (CC BY 4.0) license, which permits others to copy, redistribute, remix, transform and build upon this work for any purpose, provided the original work is properly cited, a link to the licence is given, and indication of whether changes were made. See: https://creativecommons.org/licenses/by/4.0/.

                History
                : 19 March 2020
                : 30 August 2020
                : 04 September 2020
                Funding
                Funded by: Sparks GOSH Charity;
                Funded by: FundRef http://dx.doi.org/10.13039/100013790, Brain Research UK;
                Funded by: FundRef http://dx.doi.org/10.13039/501100008164, Muscular Dystrophy UK;
                Funded by: FundRef http://dx.doi.org/10.13039/501100000833, Rosetrees Trust;
                Funded by: FundRef http://dx.doi.org/10.13039/501100001711, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung;
                Award ID: 31003A_182632
                Funded by: FundRef http://dx.doi.org/10.13039/501100001673, Fondation Jérôme Lejeune;
                Funded by: FundRef http://dx.doi.org/10.13039/501100000265, Medical Research Council;
                Award ID: G0601943
                Award ID: MR/S005021/1
                Award ID: MR/S01165X/1
                Funded by: FundRef http://dx.doi.org/10.13039/501100000346, Ataxia UK;
                Funded by: FundRef http://dx.doi.org/10.13039/100013128, Multiple System Atrophy Trust;
                Funded by: FundRef http://dx.doi.org/10.13039/100005202, Muscular Dystrophy Association;
                Categories
                Functional Genomics
                1506
                Original research
                Custom metadata
                unlocked

                Genetics
                gnb5variants, gnb5-null mouse models,iddca,cardiac conduction anomalies
                Genetics
                gnb5variants, gnb5-null mouse models, iddca, cardiac conduction anomalies

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