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      P53-regulated long non-coding RNA TUG1 affects cell proliferation in human non-small cell lung cancer, partly through epigenetically regulating HOXB7 expression

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          Abstract

          Recently, a novel class of transcripts, long non-coding RNAs (lncRNAs), is being identified at a rapid pace. These RNAs have critical roles in diverse biological processes, including tumorigenesis. Here we report that taurine-upregulated gene 1 ( TUG1), a 7.1-kb lncRNA, recruiting and binding to polycomb repressive complex 2 (PRC2), is generally downregulated in non-small cell lung carcinoma (NSCLC) tissues. In a cohort of 192 NSCLC patients, the lower expression of TUG1 was associated with a higher TNM stage and tumor size, as well as poorer overall survival ( P<0.001). Univariate and multivariate analyses revealed that TUG1 expression serves as an independent predictor for overall survival ( P<0.001). Further experiments revealed that TUG1 expression was induced by p53, and luciferase and chromatin immunoprecipitation (ChIP) assays confirmed that TUG1 was a direct transcriptional target of p53. TUG1 knockdown significantly promoted the proliferation in vitro and in vivo. Moreover, the lncRNA-mediated regulation of the expression of HOX genes in tumorigenesis and development has been recently receiving increased attention. Interestingly, inhibition of TUG1 could upregulate homeobox B7 (HOXB7) expression; ChIP assays demonstrated that the promoter of HOXB7 locus was bound by EZH2 (enhancer of zeste homolog 2), a key component of PRC2, and was H3K27 trimethylated. This TUG1-mediated growth regulation is in part due to specific modulation of HOXB7, thus participating in AKT and MAPK pathways. Together, these results suggest that p53-regulated TUG1 is a growth regulator, which acts in part through control of HOXB7. The p53/TUG1/PRC2/HOXB7 interaction might serve as targets for NSCLC diagnosis and therapy.

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          Most cited references26

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          Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene.

          A 42 kb region on human chromosome 9p21 encodes for three distinct tumor suppressors, p16(INK4A), p14(ARF) and p15(INK4B), and is altered in an estimated 30-40% of human tumors. The expression of the INK4A-ARF-INK4B gene cluster is silenced by polycomb during normal cell growth and is activated by oncogenic insults and during aging. How the polycomb is recruited to repress this gene cluster is unclear. Here, we show that expression of oncogenic Ras, which stimulates the expression of p15(INK4B) and p16(INK4A), but not p14(ARF), inhibits the expression of ANRIL (antisense non-coding RNA in the INK4 locus), a 3.8 kb-long non-coding RNA expressed in the opposite direction from INK4A-ARF-INK4B. We show that the p15(INK4B) locus is bound by SUZ12, a component of polycomb repression complex 2 (PRC2), and is H3K27-trimethylated. Notably, depletion of ANRIL disrupts the SUZ12 binding to the p15(INK4B) locus, increases the expression of p15(INK4B), but not p16(INK4A) or p14(ARF), and inhibits cellular proliferation. Finally, RNA immunoprecipitation demonstrates that ANRIL binds to SUZ12 in vivo. Collectively, these results suggest a model in which ANRIL binds to and recruits PRC2 to repress the expression of p15(INK4B) locus.
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            The Hox genes and their roles in oncogenesis.

            Hox genes, a highly conserved subgroup of the homeobox superfamily, have crucial roles in development, regulating numerous processes including apoptosis, receptor signalling, differentiation, motility and angiogenesis. Aberrations in Hox gene expression have been reported in abnormal development and malignancy, indicating that altered expression of Hox genes could be important for both oncogenesis and tumour suppression, depending on context. Therefore, Hox gene expression could be important in diagnosis and therapy.
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              Modulating Hox gene functions during animal body patterning.

              With their power to shape animal morphology, few genes have captured the imagination of biologists as the evolutionarily conserved members of the Hox clusters have done. Recent research has provided new insight into how Hox proteins cause morphological diversity at the organismal and evolutionary levels. Furthermore, an expanding collection of sequences that are directly regulated by Hox proteins provides information on the specificity of target-gene activation, which might allow the successful prediction of novel Hox-response genes. Finally, the recent discovery of microRNA genes within the Hox gene clusters indicates yet another level of control by Hox genes in development and evolution.
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                Author and article information

                Journal
                Cell Death Dis
                Cell Death Dis
                Cell Death & Disease
                Nature Publishing Group
                2041-4889
                May 2014
                22 May 2014
                1 May 2014
                : 5
                : 5
                : e1243
                Affiliations
                [1 ]Department of Biochemistry and Molecular Biology, Nanjing Medical University , Nanjing, Jiangsu, China
                [2 ]Central Laboratory, Second Affiliated Hospital of Southeast University , Nanjing, Jiangsu, China
                [3 ]Department of Oncology, First Affiliated Hospital of Nanjing Medical University , Nanjing, Jiangsu, China
                [4 ]Department of Oncology, Second Affiliated Hospital of Nanjing Medical University , Nanjing, Jiangsu, China
                [5 ]Department of Oncology, Affiliated Nanjing Hospital of Nanjing Medical Univeraity , Nanjing, Jiangsu, China
                Author notes
                [* ]Department of Biochemistry and Molecular Biology, Nanjing Medical University , Nanjing, Jiangsu 210000, China. Tel: +86 25 8686 2728; Fax: +86 25 8686 2728; E-mail: dewei@ 123456njmu.edu.cn
                [* ]Department of Oncology, First Affiliated Hospital of Nanjing Medical University , Nanjing, Jiangsu, China. Tel: +86 25 6813 6428; Fax: +86 25 8372 4440; E-mail: nanjingyongqianshu@ 123456163.com
                [* ]Department of Oncology, Second Affiliated Hospital of Nanjing Medical University , Nanjing, Jiangsu, China. Tel: +86 25 5850 9810; Fax: +86 25 5850 9994; E-mail: nanjingzhaoxiawang@ 123456163.com
                [6]

                These authors contributed equally to this work and should be regarded as joint first authors.

                Article
                cddis2014201
                10.1038/cddis.2014.201
                4047917
                24853421
                ae57c73d-287d-42ae-9a96-d13edb0a4587
                Copyright © 2014 Macmillan Publishers Limited

                Cell Death and Disease is an open-access journal published by Nature Publishing Group. This work is licensed under a Creative Commons Attribution 3.0 Unported License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/

                History
                : 13 December 2013
                : 03 April 2014
                : 08 April 2014
                Categories
                Original Article

                Cell biology
                p53,tug1,proliferation,non-small cell lung cancer,hoxb7
                Cell biology
                p53, tug1, proliferation, non-small cell lung cancer, hoxb7

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